PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002297m
Common NameCICLE_v10002297mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 245aa    MW: 26027.9 Da    PI: 8.2385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002297mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002398120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ C+k Fs+   L  H  +H
  Ciclev10002297m  98 FKCSVCDKAFSSYQALGGHKASH 120
                      89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-997120No hitNo description
PfamPF139121.2E-1397122IPR007087Zinc finger, C2H2
SMARTSM003550.01398120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-498121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.07698120IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576674.11E-9150177No hitNo description
PfamPF139121.4E-13154179IPR007087Zinc finger, C2H2
SMARTSM003550.19155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764155184IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MALEALNSPT TSTPPFHFEE ANLHCLEPWT KRKRSKRPHN PPTEEEYLAL CLVMLARGTT  60
STAALTNCNT TTTASQRQKS PAPSTAATTS SSDQKLVFKC SVCDKAFSSY QALGGHKASH  120
RKGSGGGDEH SASTTTNTNA TATTTGVPNA TGRTHECSIC HKSFPTGQAL GGHKRCHYDG  180
GEKSGVTSSG SSSTHSQVSH RDFDLNLPVL PELSPAFFFS GDDEVESPLP AKKPRLFLPP  240
KIEV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.36540.0abscission zone| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8208940.0KC820894.1 Citrus trifoliata Cys2/His2-type zinc finger protein (PtrZPT2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433625.11e-180hypothetical protein CICLE_v10002297mg
SwissprotQ962893e-65ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A067H1D31e-180A0A067H1D3_CITSI; Uncharacterized protein
TrEMBLV4T6001e-180V4T600_9R
STRINGPOPTR_0002s12010.12e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-55salt tolerance zinc finger